Legacy diagrams

MapMan desktop application

The MapMan desktop application displays plant protein function annotation results combined with gene expression data onto diagrams of metabolic pathways or other processes. This requires an installation of the MapMan desktop application (available for MS Windows, MacOS and Linux) on a local computer (see "Installation").

To display protein function annotations combined with gene expression data for a certain set of protein sequences, the installed MapMan desktop application needs:

Publications

Diagrams for the MapMan desktop application

The MapMan desktop application requires a diagram that illustrates the pathway or process to be visualized. Each diagram consists of a pathway image file (SVG-format) and an extra protein/gene mapping file (XML-format).
The X4.5 diagrams can only be used with results from Mercator4 version 5, not with results from other Mercator4 versions or from Mercator v.3.6.

Basic diagrams for annotations from Mercator4 v.5

Download a diagram from the lists below and unzip it (the .zip file contains both the pathway image file and the protein mapping file). The list contains the currently available diagrams for Mercator4 and will be extended.

Available basic diagrams

Custom-made diagrams for annotations

User can create an individual pathway diagram to display their own data. Use your favorite image software to create the background image file. Choose a version of Mercator annotations and generate the extra protein mapping file within the MapMan desktop application by using annotation result files from the chosen Mercator version. Some custom-made diagrams are publicly available.

Available custom-made diagrams

Diagrams for the MapMan desktop application

The MapMan desktop application requires a diagram that illustrates the pathway or process to be visualized. Each diagram consists of a pathway image file (SVG-format) and an extra protein/gene mapping file (XML-format). There are different diagram sets for Mercator4 annotations and for Mercator v.3.6 annotations available.
The X4.4 diagrams can only be used with results from Mercator4 version 4, not with results from other Mercator4 versions or from Mercator v.3.6.

Basic diagrams for annotations from Mercator4 v.4

Download a diagram from the lists below and unzip it (the .zip file contains both the pathway image file and the protein mapping file). The list contains the currently available diagrams for Mercator4 and will be extended.

Available basic diagrams for Mercator4 v.4 annotations

Custom-made diagrams for annotations

User can create an individual pathway diagram to display their own data. Use your favorite image software to create the background image file. Choose a version of Mercator annotations and generate the extra protein mapping file within the MapMan desktop application by using annotation result files from the chosen Mercator version. Some custom-made diagrams are publicly available.

Available custom-made diagrams for Mercator4 v.4 annotations

Diagrams for the MapMan desktop application

The MapMan desktop application requires a diagram that illustrates the pathway or process to be visualized. Each diagram consists of a pathway image file (SVG-format) and an extra protein/gene mapping file (XML-format). There are different diagram sets for Mercator4 annotations and for Mercator v.3.6 annotations available.
The X4.3 diagrams can only be used with results from Mercator4 version 3, not with results from other Mercator4 versions or from Mercator v.3.6.

Basic diagrams for annotations from Mercator4 v.3

Download a diagram from the lists below and unzip it (the .zip file contains both the pathway image file and the protein mapping file). The list contains the currently available diagrams for Mercator4 and will be extended.

Available basic diagrams for Mercator4 v.3 annotations

Custom-made diagrams for annotations

User can create an individual pathway diagram to display their own data. Use your favorite image software to create the background image file. Choose a version of Mercator annotations and generate the extra protein mapping file within the MapMan desktop application by using annotation result files from the chosen Mercator version. Some custom-made diagrams are publicly available.

Available custom-made diagrams for Mercator4 v.3 annotations

Diagrams for the MapMan desktop application

The MapMan desktop application requires a diagram that illustrates the pathway or process to be visualized. Each diagram consists of a pathway image file (SVG-format) and an extra protein/gene mapping file (XML-format). There are different diagram sets for Mercator4 annotations and for Mercator v.3.6 annotations available.
The MapMan v.3 diagrams can only be used with results from Mercator v.3.6, not with results from Mercator4 versions.

Basic diagrams for annotations from Mercator v.3.6

Download a diagram from the lists below and unzip it (the .zip file contains both the pathway image file and the protein mapping file). The list contains the currently available diagrams for Mercator4 and will be extended.

Available basic diagrams for Mercator v.3.6 annotations

Custom-made diagrams for annotations

User can create an individual pathway diagram to display their own data. Use your favorite image software to create the background image file. Choose a version of Mercator annotations and generate the extra protein mapping file within the MapMan desktop application by using annotation result files from the chosen Mercator version. Some custom-made diagrams are publicly available.

Available custom-made diagrams for Mercator v.3.6 annotations

© 2022 Usadel lab, IBG-4, Forschungszentrum Jülich / Heinrich Heine University Düsseldorf