Mercator version 3.6

General
Parameters
TAIR:   TAIR Release 10
PPAP:   SwissProt/UniProt Plant Proteins
CHLAMY:   JGI Chlamy release 4 Augustus models
ORYZA:   TIGR5 rice proteins
KOG:   Clusters of orthologous eucaryotic genes database (KOG)
CDD:   Use conserved domain database
IPR:   Include interpro scan (long runtime)
BLAST_CUTOFF: 
MULTIPLE:   Allow multiple bin assignments
CONSERVATIVE:   Consider the "unassigned" bin with equal weight when assigning bincodes.
ANNOTATE:   Append database annotation to mapping
IS_DNA:   Sequence file contains DNA sequence
Input Sequence

PLEASE NOTE:
Maximally 30 * 106 symbols (nucleotides or aminoacids) may be uploaded in FASTA format.
If you would like to submit a larger data set, please contact us.

Mercator

Mercator v.3.6

This is the old version of the Mercator annotation tool for the MapMan annotation. All new developments (faster, more precise, more consistent, better ontology, makes you breakfast) are in the new branch.

  •  See navigation tab about Mercator for details about the Mercator v.3.6 online plant protein annotation tool
  •  If you find Mercator v.3.6 useful please cite:

Lohse M, Nagel A, Herter T, May P, Schroda M, Zrenner R, Tohge T, Fernie AR, Stitt M, Usadel B

Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data.

Plant Cell Environ. 2014 May; 37(5): 1250-1258

 

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